WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48A5A.1.1 Sequence Name  Y48A5A.1.1
Length (nt)  1455   Chromosome Location  IV: 1965481-1969634
Chromosome . Primary Identifier  IV Chromosome Location . Start  1965481
Chromosome Location . End  1969634 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48A5A.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021655 Y48A5A.1 Y48A5A.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48A5A.1 Y48A5A.1 1296   IV: 1965481-1965623

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48A5A.1.1 1965481 1969634 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

5 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon114368   143   IV: 1965481-1965623 Caenorhabditis elegans
Exon114370   71   IV: 1965858-1965928 Caenorhabditis elegans
Exon114371   400   IV: 1966037-1966436 Caenorhabditis elegans
Exon114372   298   IV: 1967826-1968123 Caenorhabditis elegans
Exon114373   543   IV: 1969092-1969634 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48A5A.1.1 1965481 1969634 1

1 Sequence

Length
1455

1 Sequence Ontology Term

Identifier Name Description
transcript