WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y76B12C.7a.1 Sequence Name  Y76B12C.7a.1
Length (nt)  4485   Chromosome Location  IV: 2009038-2032996
Chromosome . Primary Identifier  IV Chromosome Location . Start  2009038
Chromosome Location . End  2032996 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y76B12C.7a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00022301 cpsf-1 Y76B12C.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y76B12C.7a Y76B12C.7a 4365   IV: 2009154-2009208

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y76B12C.7a.1 2009038 2032996 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon114415   171   IV: 2009038-2009208 Caenorhabditis elegans
Exon114420   340   IV: 2010399-2010738 Caenorhabditis elegans
Exon114424   721   IV: 2013054-2013774 Caenorhabditis elegans
Exon114426   316   IV: 2015249-2015564 Caenorhabditis elegans
Exon114428   170   IV: 2017577-2017746 Caenorhabditis elegans
Exon114431   185   IV: 2019244-2019428 Caenorhabditis elegans
Exon114433   270   IV: 2020863-2021132 Caenorhabditis elegans
Exon114435   120   IV: 2022574-2022693 Caenorhabditis elegans
Exon114437   469   IV: 2023338-2023806 Caenorhabditis elegans
Exon114439   282   IV: 2025632-2025913 Caenorhabditis elegans
Exon114442   377   IV: 2027471-2027847 Caenorhabditis elegans
Exon114445   413   IV: 2029046-2029458 Caenorhabditis elegans
Exon114448   233   IV: 2030152-2030384 Caenorhabditis elegans
Exon114449   152   IV: 2032164-2032315 Caenorhabditis elegans
Exon114450   183   IV: 2032622-2032804 Caenorhabditis elegans
Exon114451   83   IV: 2032914-2032996 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y76B12C.7a.1 2009038 2032996 -1

1 Sequence

Length
4485

1 Sequence Ontology Term

Identifier Name Description
transcript