WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R05C11.3.1 Sequence Name  R05C11.3.1
Length (nt)  3998   Chromosome Location  IV: 2084034-2091919
Chromosome . Primary Identifier  IV Chromosome Location . Start  2084034
Chromosome Location . End  2091919 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R05C11.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019875 mca-2 R05C11.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R05C11.3 R05C11.3 3477   IV: 2084051-2084134

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R05C11.3.1 2084034 2091919 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon114496   101   IV: 2084034-2084134 Caenorhabditis elegans
Exon114497   259   IV: 2084190-2084448 Caenorhabditis elegans
Exon114498   120   IV: 2084837-2084956 Caenorhabditis elegans
Exon114499   611   IV: 2085001-2085611 Caenorhabditis elegans
Exon114500   253   IV: 2085656-2085908 Caenorhabditis elegans
Exon114501   999   IV: 2086547-2087545 Caenorhabditis elegans
Exon114502   563   IV: 2088161-2088723 Caenorhabditis elegans
Exon114503   165   IV: 2089464-2089628 Caenorhabditis elegans
Exon114504   207   IV: 2089736-2089942 Caenorhabditis elegans
Exon114505   133   IV: 2089995-2090127 Caenorhabditis elegans
Exon114506   587   IV: 2091333-2091919 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R05C11.3.1 2084034 2091919 1

1 Sequence

Length
3998

1 Sequence Ontology Term

Identifier Name Description
transcript