WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y38F2AR.12b.1 Sequence Name  Y38F2AR.12b.1
Length (nt)  3469   Chromosome Location  IV: 2399537-2410943
Chromosome . Primary Identifier  IV Chromosome Location . Start  2399537
Chromosome Location . End  2410943 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y38F2AR.12b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021430 Y38F2AR.12 Y38F2AR.12 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y38F2AR.12b Y38F2AR.12b 1551   IV: 2399560-2399619

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y38F2AR.12b.1 2399537 2410943 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon115018   83   IV: 2399537-2399619 Caenorhabditis elegans
Exon115021   121   IV: 2399828-2399948 Caenorhabditis elegans
Exon115024   320   IV: 2400271-2400590 Caenorhabditis elegans
Exon115027   480   IV: 2400906-2401385 Caenorhabditis elegans
Exon115030   168   IV: 2401717-2401884 Caenorhabditis elegans
Exon115034   685   IV: 2402468-2403152 Caenorhabditis elegans
Exon115041   572   IV: 2403911-2404482 Caenorhabditis elegans
Exon115044   268   IV: 2408137-2408404 Caenorhabditis elegans
Exon115048   190   IV: 2409377-2409566 Caenorhabditis elegans
Exon115052   324   IV: 2409614-2409937 Caenorhabditis elegans
Exon115054   258   IV: 2410686-2410943 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y38F2AR.12b.1 2399537 2410943 -1

1 Sequence

Length
3469

1 Sequence Ontology Term

Identifier Name Description
transcript