WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y38F2AR.12c.1 Sequence Name  Y38F2AR.12c.1
Length (nt)  2832   Chromosome Location  IV: 2399560-2409831
Chromosome . Primary Identifier  IV Chromosome Location . Start  2399560
Chromosome Location . End  2409831 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y38F2AR.12c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021430 Y38F2AR.12 Y38F2AR.12 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y38F2AR.12c Y38F2AR.12c 2832   IV: 2399560-2399619

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y38F2AR.12c.1 2399560 2409831 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon115019   60   IV: 2399560-2399619 Caenorhabditis elegans
Exon115022   121   IV: 2399828-2399948 Caenorhabditis elegans
Exon115025   320   IV: 2400271-2400590 Caenorhabditis elegans
Exon115028   480   IV: 2400906-2401385 Caenorhabditis elegans
Exon115031   168   IV: 2401717-2401884 Caenorhabditis elegans
Exon115033   333   IV: 2402468-2402800 Caenorhabditis elegans
Exon115036   102   IV: 2403051-2403152 Caenorhabditis elegans
Exon115042   572   IV: 2403911-2404482 Caenorhabditis elegans
Exon115045   268   IV: 2408137-2408404 Caenorhabditis elegans
Exon115049   190   IV: 2409377-2409566 Caenorhabditis elegans
Exon115050   218   IV: 2409614-2409831 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y38F2AR.12c.1 2399560 2409831 -1

1 Sequence

Length
2832

1 Sequence Ontology Term

Identifier Name Description
transcript