WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y69A2AR.4.1 Sequence Name  Y69A2AR.4.1
Length (nt)  1935   Chromosome Location  IV: 2618869-2625503
Chromosome . Primary Identifier  IV Chromosome Location . Start  2618869
Chromosome Location . End  2625503 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y69A2AR.4.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004878 smf-3 Y69A2AR.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y69A2AR.4 Y69A2AR.4 1683   IV: 2619891-2619998

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y69A2AR.4.1 2618869 2625503 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon115353   100   IV: 2618869-2618968 Caenorhabditis elegans
Exon115355   122   IV: 2619877-2619998 Caenorhabditis elegans
Exon115356   350   IV: 2620593-2620942 Caenorhabditis elegans
Exon115358   163   IV: 2621462-2621624 Caenorhabditis elegans
Exon115360   132   IV: 2621688-2621819 Caenorhabditis elegans
Exon115362   159   IV: 2622433-2622591 Caenorhabditis elegans
Exon115364   222   IV: 2623089-2623310 Caenorhabditis elegans
Exon115366   144   IV: 2623857-2624000 Caenorhabditis elegans
Exon115368   83   IV: 2624053-2624135 Caenorhabditis elegans
Exon115370   160   IV: 2624610-2624769 Caenorhabditis elegans
Exon115372   48   IV: 2624831-2624878 Caenorhabditis elegans
Exon115374   252   IV: 2625252-2625503 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y69A2AR.4.1 2618869 2625503 1

1 Sequence

Length
1935

1 Sequence Ontology Term

Identifier Name Description
transcript