WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y69A2AR.2a.1 Sequence Name  Y69A2AR.2a.1
Length (nt)  2315   Chromosome Location  IV: 2642979-2650111
Chromosome . Primary Identifier  IV Chromosome Location . Start  2642979
Chromosome Location . End  2650111 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y69A2AR.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004367 ric-8 Y69A2AR.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y69A2AR.2a Y69A2AR.2a 1701   IV: 2642987-2643124

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y69A2AR.2a.1 2642979 2650111 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon115443   146   IV: 2642979-2643124 Caenorhabditis elegans
Exon115446   102   IV: 2643174-2643275 Caenorhabditis elegans
Exon115450   85   IV: 2643361-2643445 Caenorhabditis elegans
Exon115455   70   IV: 2643504-2643573 Caenorhabditis elegans
Exon115460   178   IV: 2643763-2643940 Caenorhabditis elegans
Exon115464   171   IV: 2644414-2644584 Caenorhabditis elegans
Exon115467   411   IV: 2645361-2645771 Caenorhabditis elegans
Exon115470   148   IV: 2647114-2647261 Caenorhabditis elegans
Exon115473   145   IV: 2648546-2648690 Caenorhabditis elegans
Exon115476   128   IV: 2648742-2648869 Caenorhabditis elegans
Exon115481   731   IV: 2649381-2650111 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y69A2AR.2a.1 2642979 2650111 1

1 Sequence

Length
2315

1 Sequence Ontology Term

Identifier Name Description
transcript