WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y69A2AR.1a.1 Sequence Name  Y69A2AR.1a.1
Length (nt)  1552   Chromosome Location  IV: 2667050-2672203
Chromosome . Primary Identifier  IV Chromosome Location . Start  2667050
Chromosome Location . End  2672203 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y69A2AR.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00022074 Y69A2AR.1 Y69A2AR.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y69A2AR.1a Y69A2AR.1a 1461   IV: 2667065-2667088

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y69A2AR.1a.1 2667050 2672203 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon115507   39   IV: 2667050-2667088 Caenorhabditis elegans
Exon115511   111   IV: 2667139-2667249 Caenorhabditis elegans
Exon115515   147   IV: 2667356-2667502 Caenorhabditis elegans
Exon115519   77   IV: 2667561-2667637 Caenorhabditis elegans
Exon115523   118   IV: 2667741-2667858 Caenorhabditis elegans
Exon115527   72   IV: 2668821-2668892 Caenorhabditis elegans
Exon115533   226   IV: 2668936-2669161 Caenorhabditis elegans
Exon115539   178   IV: 2669269-2669446 Caenorhabditis elegans
Exon115545   109   IV: 2670089-2670197 Caenorhabditis elegans
Exon115552   183   IV: 2670474-2670656 Caenorhabditis elegans
Exon115557   131   IV: 2671848-2671978 Caenorhabditis elegans
Exon115572   161   IV: 2672043-2672203 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y69A2AR.1a.1 2667050 2672203 1

1 Sequence

Length
1552

1 Sequence Ontology Term

Identifier Name Description
transcript