WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54G2A.44.1 Sequence Name  Y54G2A.44.1
Length (nt)  729   Chromosome Location  IV: 2801858-2803283
Chromosome . Primary Identifier  IV Chromosome Location . Start  2801858
Chromosome Location . End  2803283 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54G2A.44.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00044487 Y54G2A.44 Y54G2A.44 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54G2A.44 Y54G2A.44 642   IV: 2801902-2801979

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54G2A.44.1 2801858 2803283 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

6 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon115699   122   IV: 2801858-2801979 Caenorhabditis elegans
Exon115700   123   IV: 2802031-2802153 Caenorhabditis elegans
Exon115702   78   IV: 2802454-2802531 Caenorhabditis elegans
Exon115703   171   IV: 2802586-2802756 Caenorhabditis elegans
Exon115704   90   IV: 2803001-2803090 Caenorhabditis elegans
Exon115705   145   IV: 2803139-2803283 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54G2A.44.1 2801858 2803283 1

1 Sequence

Length
729

1 Sequence Ontology Term

Identifier Name Description
transcript