WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54G2A.37.1 Sequence Name  Y54G2A.37.1
Length (nt)  1149   Chromosome Location  IV: 2820708-2823542
Chromosome . Primary Identifier  IV Chromosome Location . Start  2820708
Chromosome Location . End  2823542 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54G2A.37.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00023484 Y54G2A.37 Y54G2A.37 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54G2A.37 Y54G2A.37 1083   IV: 2820730-2820821

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54G2A.37.1 2820708 2823542 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon115748   114   IV: 2820708-2820821 Caenorhabditis elegans
Exon115749   116   IV: 2821823-2821938 Caenorhabditis elegans
Exon115750   126   IV: 2821986-2822111 Caenorhabditis elegans
Exon115751   108   IV: 2822160-2822267 Caenorhabditis elegans
Exon115752   48   IV: 2822432-2822479 Caenorhabditis elegans
Exon115753   48   IV: 2822659-2822706 Caenorhabditis elegans
Exon115755   80   IV: 2822782-2822861 Caenorhabditis elegans
Exon115756   194   IV: 2822905-2823098 Caenorhabditis elegans
Exon115757   78   IV: 2823168-2823245 Caenorhabditis elegans
Exon115758   237   IV: 2823306-2823542 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54G2A.37.1 2820708 2823542 1

1 Sequence

Length
1149

1 Sequence Ontology Term

Identifier Name Description
transcript