WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Nc Primary Transcript :

WormMine ID  Transcript:Y54G2A.39c Sequence Name  Y54G2A.39c
Length (nt)  1681   Chromosome Location  IV: 2823806-2828016
Chromosome . Primary Identifier  IV Chromosome Location . Start  2823806
Chromosome Location . End  2828016 Method  non_coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54G2A.39c

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00043062 clec-80 Y54G2A.39 Caenorhabditis elegans
 

Other

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y54G2A.39c 2823806 2828016 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

9 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon115760   92   IV: 2823806-2823897 Caenorhabditis elegans
Exon115762   125   IV: 2824182-2824306 Caenorhabditis elegans
Exon115764   536   IV: 2824941-2825476 Caenorhabditis elegans
Exon115768   122   IV: 2825526-2825647 Caenorhabditis elegans
Exon115770   255   IV: 2826317-2826571 Caenorhabditis elegans
Exon115772   80   IV: 2826630-2826709 Caenorhabditis elegans
Exon115774   194   IV: 2827441-2827634 Caenorhabditis elegans
Exon115776   78   IV: 2827683-2827760 Caenorhabditis elegans
Exon115777   199   IV: 2827818-2828016 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y54G2A.39c 2823806 2828016 1

1 Sequence

Length
1681

1 Sequence Ontology Term

Identifier Name Description
transcript