WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54G2A.16c.1 Sequence Name  Y54G2A.16c.1
Length (nt)  381   Chromosome Location  IV: 2855701-2856172
Chromosome . Primary Identifier  IV Chromosome Location . Start  2855701
Chromosome Location . End  2856172 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54G2A.16c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021881 Y54G2A.16 Y54G2A.16 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54G2A.16c Y54G2A.16c 381   IV: 2855701-2855764

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54G2A.16c.1 2855701 2856172 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

3 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon115850   64   IV: 2855701-2855764 Caenorhabditis elegans
Exon115853   182   IV: 2855809-2855990 Caenorhabditis elegans
Exon115854   135   IV: 2856038-2856172 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54G2A.16c.1 2855701 2856172 -1

1 Sequence

Length
381

1 Sequence Ontology Term

Identifier Name Description
transcript