WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y54G2A.17a Sequence Name  Y54G2A.17a
Length (nt)  1629   Chromosome Location  IV: 2872224-2872301
Chromosome . Primary Identifier  IV Chromosome Location . Start  2872224
Chromosome Location . End  2872301
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54G2A.17a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE46116 NPRT-1, isoform a 61.2 542 Caenorhabditis elegans
 

Other

10 RNAi

WormBase ID
WBRNAi00057446
WBRNAi00057447
WBRNAi00075043
WBRNAi00075042
WBRNAi00037497
WBRNAi00075045
WBRNAi00075044
WBRNAi00075046
WBRNAi00075041
WBRNAi00072314

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y54G2A.17a 2872224 2872301 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021882 nprt-1 Y54G2A.17 Caenorhabditis elegans

6 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y54G2A.17a 2872224 2872301 -1
CDS:Y54G2A.17a 2873229 2873411 -1
CDS:Y54G2A.17a 2875195 2875383 -1
CDS:Y54G2A.17a 2879262 2879611 -1
CDS:Y54G2A.17a 2880709 2880880 -1
CDS:Y54G2A.17a 2881647 2882303 -1

1 Sequence

Length
1629

1 Sequence Ontology Term

Identifier Name Description
CDS  

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y54G2A.17a.3 Y54G2A.17a.3 1875   IV: 2872023-2882348
Transcript:Y54G2A.17a.1 Y54G2A.17a.1 1920   IV: 2872023-2890451
Transcript:Y54G2A.17a.2 Y54G2A.17a.2 1971   IV: 2872023-2885337