WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00195623 Gene Name  Y54G2A.58
Sequence Name  ? Y54G2A.58 Organism  Caenorhabditis elegans
Automated Description  Enriched in ut4 based on single-cell RNA-seq studies. Is affected by etr-1 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 202
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00195623

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y54G2A.58 Y54G2A.58 202   IV: 2890642-2890843
 

Other

0 CDSs

0 RNAi Result

7 Allele

Public Name
gk963722
gk962726
gk771494
WBVar01726645
gk196945
WBVar00186570
ve697

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00195623 2890642 2890843 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_2890452..2890641   190 IV: 2890452-2890641 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Hypoxia: 7% oxygen. Transcripts that showed significantly increased expression at animals treated with 7% oxygen, comparing to animals grown at 21% oxygen. Fold change > 2, p-value < 0.05. WBPaper00060661:hypoxia_upregulated
  Transcripts of noncoding genes that showed significantly increased expression in muscle. DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed. WBPaper00062325:muscle_enriched_noncoding-RNA
  Single-cell RNA-Seq cell group 13_1 expressed in epithelium. scVI 0.6.0 WBPaper00065841:13_1

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00195623 2890642 2890843 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
202

1 Sequence Ontology Term