WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54G2A.50.3 Sequence Name  Y54G2A.50.3
Length (nt)  1236   Chromosome Location  IV: 2918029-2919784
Chromosome . Primary Identifier  IV Chromosome Location . Start  2918029
Chromosome Location . End  2919784 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54G2A.50.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00044493 Y54G2A.50 Y54G2A.50 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54G2A.50 Y54G2A.50 459   IV: 2918733-2918815

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54G2A.50.3 2918029 2919784 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

6 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon115959   199   IV: 2918029-2918227 Caenorhabditis elegans
Exon115960   140   IV: 2918441-2918580 Caenorhabditis elegans
Exon115965   115   IV: 2918701-2918815 Caenorhabditis elegans
Exon115968   124   IV: 2918865-2918988 Caenorhabditis elegans
Exon115971   115   IV: 2919067-2919181 Caenorhabditis elegans
Exon115974   543   IV: 2919242-2919784 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54G2A.50.3 2918029 2919784 1

1 Sequence

Length
1236

1 Sequence Ontology Term

Identifier Name Description
transcript