WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54G2A.25a.1 Sequence Name  Y54G2A.25a.1
Length (nt)  3745   Chromosome Location  IV: 2964334-2978484
Chromosome . Primary Identifier  IV Chromosome Location . Start  2964334
Chromosome Location . End  2978484 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54G2A.25a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002243 lad-2 Y54G2A.25 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54G2A.25a Y54G2A.25a 3564   IV: 2964429-2964506

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54G2A.25a.1 2964334 2978484 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

22 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon116010   173   IV: 2964334-2964506 Caenorhabditis elegans
Exon116011   251   IV: 2965250-2965500 Caenorhabditis elegans
Exon116012   192   IV: 2966176-2966367 Caenorhabditis elegans
Exon116013   156   IV: 2966418-2966573 Caenorhabditis elegans
Exon116014   129   IV: 2966784-2966912 Caenorhabditis elegans
Exon116015   112   IV: 2967217-2967328 Caenorhabditis elegans
Exon116016   191   IV: 2967585-2967775 Caenorhabditis elegans
Exon116017   124   IV: 2967825-2967948 Caenorhabditis elegans
Exon116018   369   IV: 2967993-2968361 Caenorhabditis elegans
Exon116019   134   IV: 2968811-2968944 Caenorhabditis elegans
Exon116020   119   IV: 2968992-2969110 Caenorhabditis elegans
Exon116021   160   IV: 2969166-2969325 Caenorhabditis elegans
Exon116022   121   IV: 2969740-2969860 Caenorhabditis elegans
Exon116035   161   IV: 2973461-2973621 Caenorhabditis elegans
Exon116037   288   IV: 2973675-2973962 Caenorhabditis elegans
Exon116039   285   IV: 2974531-2974815 Caenorhabditis elegans
Exon116041   203   IV: 2974866-2975068 Caenorhabditis elegans
Exon116043   121   IV: 2976310-2976430 Caenorhabditis elegans
Exon116045   71   IV: 2977214-2977284 Caenorhabditis elegans
Exon116047   117   IV: 2977331-2977447 Caenorhabditis elegans
Exon116049   115   IV: 2978172-2978286 Caenorhabditis elegans
Exon116052   153   IV: 2978332-2978484 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54G2A.25a.1 2964334 2978484 -1

1 Sequence

Length
3745

1 Sequence Ontology Term

Identifier Name Description
transcript