WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54G2A.57.1 Sequence Name  Y54G2A.57.1
Length (nt)  1315   Chromosome Location  IV: 2969940-2973466
Chromosome . Primary Identifier  IV Chromosome Location . Start  2969940
Chromosome Location . End  2973466 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54G2A.57.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00189961 Y54G2A.57 Y54G2A.57 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54G2A.57 Y54G2A.57 1200   IV: 2970010-2970040

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54G2A.57.1 2969940 2973466 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon116023   18   IV: 2969940-2969957 Caenorhabditis elegans
Exon116024   56   IV: 2969985-2970040 Caenorhabditis elegans
Exon116025   185   IV: 2970526-2970710 Caenorhabditis elegans
Exon116026   253   IV: 2970761-2971013 Caenorhabditis elegans
Exon116027   137   IV: 2971491-2971627 Caenorhabditis elegans
Exon116028   74   IV: 2971689-2971762 Caenorhabditis elegans
Exon116029   119   IV: 2971823-2971941 Caenorhabditis elegans
Exon116030   140   IV: 2971986-2972125 Caenorhabditis elegans
Exon116031   196   IV: 2972178-2972373 Caenorhabditis elegans
Exon116034   137   IV: 2973330-2973466 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54G2A.57.1 2969940 2973466 1

1 Sequence

Length
1315

1 Sequence Ontology Term

Identifier Name Description
transcript