WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54G2A.25b.1 Sequence Name  Y54G2A.25b.1
Length (nt)  1596   Chromosome Location  IV: 2972307-2978398
Chromosome . Primary Identifier  IV Chromosome Location . Start  2972307
Chromosome Location . End  2978398 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54G2A.25b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002243 lad-2 Y54G2A.25 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54G2A.25b Y54G2A.25b 1491   IV: 2972466-2972528

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54G2A.25b.1 2972307 2978398 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon116032   93   IV: 2972307-2972399 Caenorhabditis elegans
Exon116033   75   IV: 2972454-2972528 Caenorhabditis elegans
Exon116036   161   IV: 2973461-2973621 Caenorhabditis elegans
Exon116038   288   IV: 2973675-2973962 Caenorhabditis elegans
Exon116040   285   IV: 2974531-2974815 Caenorhabditis elegans
Exon116042   203   IV: 2974866-2975068 Caenorhabditis elegans
Exon116044   121   IV: 2976310-2976430 Caenorhabditis elegans
Exon116046   71   IV: 2977214-2977284 Caenorhabditis elegans
Exon116048   117   IV: 2977331-2977447 Caenorhabditis elegans
Exon116050   115   IV: 2978172-2978286 Caenorhabditis elegans
Exon116051   67   IV: 2978332-2978398 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54G2A.25b.1 2972307 2978398 -1

1 Sequence

Length
1596

1 Sequence Ontology Term

Identifier Name Description
transcript