WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54G2A.25a.1 Sequence Name  Y54G2A.25a.1
Length (nt)  3745   Chromosome Location  IV: 2964334-2978484
Chromosome . Primary Identifier  IV Chromosome Location . Start  2964334
Chromosome Location . End  2978484 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54G2A.25a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002243 lad-2 Y54G2A.25 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54G2A.25a Y54G2A.25a 3564   IV: 2964429-2964506

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54G2A.25a.1 2964334 2978484 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

22 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon116065   173   IV: 2964334-2964506 Caenorhabditis elegans
Exon116066   251   IV: 2965250-2965500 Caenorhabditis elegans
Exon116067   192   IV: 2966176-2966367 Caenorhabditis elegans
Exon116068   156   IV: 2966418-2966573 Caenorhabditis elegans
Exon116069   129   IV: 2966784-2966912 Caenorhabditis elegans
Exon116070   112   IV: 2967217-2967328 Caenorhabditis elegans
Exon116071   191   IV: 2967585-2967775 Caenorhabditis elegans
Exon116072   124   IV: 2967825-2967948 Caenorhabditis elegans
Exon116073   369   IV: 2967993-2968361 Caenorhabditis elegans
Exon116074   134   IV: 2968811-2968944 Caenorhabditis elegans
Exon116075   119   IV: 2968992-2969110 Caenorhabditis elegans
Exon116076   160   IV: 2969166-2969325 Caenorhabditis elegans
Exon116077   121   IV: 2969740-2969860 Caenorhabditis elegans
Exon116090   161   IV: 2973461-2973621 Caenorhabditis elegans
Exon116092   288   IV: 2973675-2973962 Caenorhabditis elegans
Exon116094   285   IV: 2974531-2974815 Caenorhabditis elegans
Exon116096   203   IV: 2974866-2975068 Caenorhabditis elegans
Exon116098   121   IV: 2976310-2976430 Caenorhabditis elegans
Exon116100   71   IV: 2977214-2977284 Caenorhabditis elegans
Exon116102   117   IV: 2977331-2977447 Caenorhabditis elegans
Exon116104   115   IV: 2978172-2978286 Caenorhabditis elegans
Exon116107   153   IV: 2978332-2978484 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54G2A.25a.1 2964334 2978484 -1

1 Sequence

Length
3745

1 Sequence Ontology Term

Identifier Name Description
transcript