WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y54G2A.3b Sequence Name  Y54G2A.3b
Length (nt)  495   Chromosome Location  IV: 3012703-3012819
Chromosome . Primary Identifier  IV Chromosome Location . Start  3012703
Chromosome Location . End  3012819
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54G2A.3b

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE41729 VRP-1, isoform b 19.1 164 Caenorhabditis elegans
 

Other

1 RNAi

WormBase ID
WBRNAi00057463

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y54G2A.3b 3012703 3012819 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021869 vrp-1 Y54G2A.3 Caenorhabditis elegans

3 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y54G2A.3b 3012703 3012819 1
CDS:Y54G2A.3b 3013850 3013927 1
CDS:Y54G2A.3b 3013979 3014278 1

1 Sequence

Length
495

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y54G2A.3b.1 Y54G2A.3b.1 750   IV: 3012608-3014438