WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y67D8C.10a.1 Sequence Name  Y67D8C.10a.1
Length (nt)  4405   Chromosome Location  IV: 3103157-3133149
Chromosome . Primary Identifier  IV Chromosome Location . Start  3103157
Chromosome Location . End  3133149 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y67D8C.10a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003153 mca-3 Y67D8C.10 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y67D8C.10a Y67D8C.10a 3483   IV: 3103860-3103906

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y67D8C.10a.1 3103157 3133149 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon116333   750   IV: 3103157-3103906 Caenorhabditis elegans
Exon116339   127   IV: 3105178-3105304 Caenorhabditis elegans
Exon116345   69   IV: 3109983-3110051 Caenorhabditis elegans
Exon116355   168   IV: 3116622-3116789 Caenorhabditis elegans
Exon116366   2060   IV: 3117597-3119656 Caenorhabditis elegans
Exon116377   126   IV: 3120846-3120971 Caenorhabditis elegans
Exon116388   51   IV: 3121631-3121681 Caenorhabditis elegans
Exon116400   109   IV: 3124030-3124138 Caenorhabditis elegans
Exon116412   392   IV: 3126125-3126516 Caenorhabditis elegans
Exon116422   82   IV: 3127905-3127986 Caenorhabditis elegans
Exon116432   199   IV: 3129340-3129538 Caenorhabditis elegans
Exon116443   57   IV: 3131317-3131373 Caenorhabditis elegans
Exon116454   59   IV: 3132217-3132275 Caenorhabditis elegans
Exon116464   156   IV: 3132994-3133149 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y67D8C.10a.1 3103157 3133149 -1

1 Sequence

Length
4405

1 Sequence Ontology Term

Identifier Name Description
transcript