WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y67D8C.10d.1 Sequence Name  Y67D8C.10d.1
Length (nt)  3576   Chromosome Location  IV: 3103860-3132275
Chromosome . Primary Identifier  IV Chromosome Location . Start  3103860
Chromosome Location . End  3132275 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y67D8C.10d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003153 mca-3 Y67D8C.10 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y67D8C.10d Y67D8C.10d 3513   IV: 3103860-3103906

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y67D8C.10d.1 3103860 3132275 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon116338   47   IV: 3103860-3103906 Caenorhabditis elegans
Exon116344   127   IV: 3105178-3105304 Caenorhabditis elegans
Exon116364   168   IV: 3116622-3116789 Caenorhabditis elegans
Exon116375   2060   IV: 3117597-3119656 Caenorhabditis elegans
Exon116386   126   IV: 3120846-3120971 Caenorhabditis elegans
Exon116397   51   IV: 3121631-3121681 Caenorhabditis elegans
Exon116399   99   IV: 3123745-3123843 Caenorhabditis elegans
Exon116409   109   IV: 3124030-3124138 Caenorhabditis elegans
Exon116421   392   IV: 3126125-3126516 Caenorhabditis elegans
Exon116431   82   IV: 3127905-3127986 Caenorhabditis elegans
Exon116441   199   IV: 3129340-3129538 Caenorhabditis elegans
Exon116449   57   IV: 3131317-3131373 Caenorhabditis elegans
Exon116459   59   IV: 3132217-3132275 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y67D8C.10d.1 3103860 3132275 -1

1 Sequence

Length
3576

1 Sequence Ontology Term

Identifier Name Description
transcript