WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y67D8C.10a.2 Sequence Name  Y67D8C.10a.2
Length (nt)  3878   Chromosome Location  IV: 3103651-3133116
Chromosome . Primary Identifier  IV Chromosome Location . Start  3103651
Chromosome Location . End  3133116 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y67D8C.10a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003153 mca-3 Y67D8C.10 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y67D8C.10a Y67D8C.10a 3483   IV: 3103860-3103906

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y67D8C.10a.2 3103651 3133116 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon116392   256   IV: 3103651-3103906 Caenorhabditis elegans
Exon116395   127   IV: 3105178-3105304 Caenorhabditis elegans
Exon116401   69   IV: 3109983-3110051 Caenorhabditis elegans
Exon116411   168   IV: 3116622-3116789 Caenorhabditis elegans
Exon116422   2060   IV: 3117597-3119656 Caenorhabditis elegans
Exon116433   126   IV: 3120846-3120971 Caenorhabditis elegans
Exon116444   51   IV: 3121631-3121681 Caenorhabditis elegans
Exon116456   109   IV: 3124030-3124138 Caenorhabditis elegans
Exon116468   392   IV: 3126125-3126516 Caenorhabditis elegans
Exon116478   82   IV: 3127905-3127986 Caenorhabditis elegans
Exon116488   199   IV: 3129340-3129538 Caenorhabditis elegans
Exon116497   54   IV: 3131317-3131370 Caenorhabditis elegans
Exon116507   3   IV: 3131490-3131492 Caenorhabditis elegans
Exon116510   59   IV: 3132217-3132275 Caenorhabditis elegans
Exon116517   123   IV: 3132994-3133116 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y67D8C.10a.2 3103651 3133116 -1

1 Sequence

Length
3878

1 Sequence Ontology Term

Identifier Name Description
transcript