WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:M4.1a.1 Sequence Name  M4.1a.1
Length (nt)  2619   Chromosome Location  IV: 3213760-3220301
Chromosome . Primary Identifier  IV Chromosome Location . Start  3213760
Chromosome Location . End  3220301 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
M4.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019766 slmp-1 M4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:M4.1a M4.1a 1731   IV: 3213772-3213840

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:M4.1a.1 3213760 3220301 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

8 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon116536   81   IV: 3213760-3213840 Caenorhabditis elegans
Exon116537   87   IV: 3213896-3213982 Caenorhabditis elegans
Exon116539   199   IV: 3214036-3214234 Caenorhabditis elegans
Exon116542   169   IV: 3214513-3214681 Caenorhabditis elegans
Exon116543   114   IV: 3215117-3215230 Caenorhabditis elegans
Exon116545   404   IV: 3215678-3216081 Caenorhabditis elegans
Exon116547   578   IV: 3217061-3217638 Caenorhabditis elegans
Exon116549   987   IV: 3219315-3220301 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:M4.1a.1 3213760 3220301 1

1 Sequence

Length
2619

1 Sequence Ontology Term

Identifier Name Description
transcript