WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F42A6.7c.2 Sequence Name  F42A6.7c.2
Length (nt)  1322   Chromosome Location  IV: 3336927-3338300
Chromosome . Primary Identifier  IV Chromosome Location . Start  3336927
Chromosome Location . End  3338300 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F42A6.7c.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001999 hrpa-1 F42A6.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F42A6.7c F42A6.7c 927   IV: 3337233-3337510

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F42A6.7c.2 3336927 3338300 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

2 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon116803   584   IV: 3336927-3337510 Caenorhabditis elegans
Exon116816   738   IV: 3337563-3338300 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F42A6.7c.2 3336927 3338300 -1

1 Sequence

Length
1322

1 Sequence Ontology Term

Identifier Name Description
transcript