WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0212.1b.1 Sequence Name  B0212.1b.1
Length (nt)  2259   Chromosome Location  IV: 3568979-3577630
Chromosome . Primary Identifier  IV Chromosome Location . Start  3568979
Chromosome Location . End  3577630 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0212.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015035 otpl-1 B0212.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0212.1b B0212.1b 2259   IV: 3568979-3568993

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:B0212.1b.1 3568979 3577630 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon117306   15   IV: 3568979-3568993 Caenorhabditis elegans
Exon117307   109   IV: 3569071-3569179 Caenorhabditis elegans
Exon117308   187   IV: 3570719-3570905 Caenorhabditis elegans
Exon117310   67   IV: 3571048-3571114 Caenorhabditis elegans
Exon117312   57   IV: 3571381-3571437 Caenorhabditis elegans
Exon117314   128   IV: 3571492-3571619 Caenorhabditis elegans
Exon117318   124   IV: 3573556-3573679 Caenorhabditis elegans
Exon117321   105   IV: 3573791-3573895 Caenorhabditis elegans
Exon117324   139   IV: 3574079-3574217 Caenorhabditis elegans
Exon117327   271   IV: 3574267-3574537 Caenorhabditis elegans
Exon117330   176   IV: 3574993-3575168 Caenorhabditis elegans
Exon117333   87   IV: 3575254-3575340 Caenorhabditis elegans
Exon117337   200   IV: 3575515-3575714 Caenorhabditis elegans
Exon117340   243   IV: 3576050-3576292 Caenorhabditis elegans
Exon117343   175   IV: 3576883-3577057 Caenorhabditis elegans
Exon117345   176   IV: 3577455-3577630 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:B0212.1b.1 3568979 3577630 1

1 Sequence

Length
2259

1 Sequence Ontology Term

Identifier Name Description
transcript