WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0212.1a.1 Sequence Name  B0212.1a.1
Length (nt)  2011   Chromosome Location  IV: 3572472-3577770
Chromosome . Primary Identifier  IV Chromosome Location . Start  3572472
Chromosome Location . End  3577770 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0212.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015035 otpl-1 B0212.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0212.1a B0212.1a 1848   IV: 3572495-3572646

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:B0212.1a.1 3572472 3577770 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon117316   175   IV: 3572472-3572646 Caenorhabditis elegans
Exon117317   124   IV: 3573556-3573679 Caenorhabditis elegans
Exon117320   105   IV: 3573791-3573895 Caenorhabditis elegans
Exon117323   139   IV: 3574079-3574217 Caenorhabditis elegans
Exon117326   271   IV: 3574267-3574537 Caenorhabditis elegans
Exon117329   176   IV: 3574993-3575168 Caenorhabditis elegans
Exon117332   87   IV: 3575254-3575340 Caenorhabditis elegans
Exon117336   200   IV: 3575515-3575714 Caenorhabditis elegans
Exon117339   243   IV: 3576050-3576292 Caenorhabditis elegans
Exon117342   175   IV: 3576883-3577057 Caenorhabditis elegans
Exon117347   316   IV: 3577455-3577770 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:B0212.1a.1 3572472 3577770 1

1 Sequence

Length
2011

1 Sequence Ontology Term

Identifier Name Description
transcript