WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZC416.8b.1 Sequence Name  ZC416.8b.1
Length (nt)  2073   Chromosome Location  IV: 3613931-3624697
Chromosome . Primary Identifier  IV Chromosome Location . Start  3613931
Chromosome Location . End  3624697 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZC416.8b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000481 cha-1 ZC416.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZC416.8b ZC416.8b 1884   IV: 3614054-3614410

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:ZC416.8b.1 3613931 3624697 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon117408   480   IV: 3613931-3614410 Caenorhabditis elegans
Exon117409   199   IV: 3614654-3614852 Caenorhabditis elegans
Exon117410   224   IV: 3614970-3615193 Caenorhabditis elegans
Exon117411   242   IV: 3615458-3615699 Caenorhabditis elegans
Exon117412   169   IV: 3615743-3615911 Caenorhabditis elegans
Exon117413   277   IV: 3615956-3616232 Caenorhabditis elegans
Exon117414   173   IV: 3616304-3616476 Caenorhabditis elegans
Exon117415   142   IV: 3616520-3616661 Caenorhabditis elegans
Exon117416   50   IV: 3617192-3617241 Caenorhabditis elegans
Exon117417   51   IV: 3617725-3617775 Caenorhabditis elegans
Exon117421   66   IV: 3624632-3624697 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:ZC416.8b.1 3613931 3624697 -1

1 Sequence

Length
2073

1 Sequence Ontology Term

Identifier Name Description
transcript