WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00198320 Gene Name  Y37E11AL.15
Sequence Name  ? Y37E11AL.15 Organism  Caenorhabditis elegans
Automated Description  Enriched in neurons based on RNA-seq and single-cell RNA-seq studies. Is affected by eat-2 based on microarray studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 132
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00198320

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y37E11AL.15 Y37E11AL.15 132   IV: 3676058-3676189
 

Other

0 CDSs

0 RNAi Result

4 Allele

Public Name
gk963722
gk198505
gk2950
gk725535

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00198320 3676058 3676189 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_3668704..3676057   7354 IV: 3668704-3676057 Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology. DESEQ2, fold change > 2 and FDR < 0.01. WBPaper00062103:neuron_enriched
  Transcripts that showed significantly decreased expression in eat-2(ad465) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:eat-2(ad465)_downregulated
  Single-cell RNA-Seq cell group 118_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:118_0
  Single-cell RNA-Seq cell group 20_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:20_0
  Single-cell RNA-Seq cell group 20_2 expressed in neuron. scVI 0.6.0 WBPaper00065841:20_2

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00198320 3676058 3676189 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
132

1 Sequence Ontology Term