WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y37E11AM.1a.1 Sequence Name  Y37E11AM.1a.1
Length (nt)  3321   Chromosome Location  IV: 3726164-3735496
Chromosome . Primary Identifier  IV Chromosome Location . Start  3726164
Chromosome Location . End  3735496 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y37E11AM.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021365 smgl-2 Y37E11AM.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y37E11AM.1a Y37E11AM.1a 3270   IV: 3726164-3726248

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y37E11AM.1a.1 3726164 3735496 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon117583   85   IV: 3726164-3726248 Caenorhabditis elegans
Exon117584   88   IV: 3726302-3726389 Caenorhabditis elegans
Exon117585   304   IV: 3726437-3726740 Caenorhabditis elegans
Exon117586   191   IV: 3726791-3726981 Caenorhabditis elegans
Exon117587   196   IV: 3728160-3728355 Caenorhabditis elegans
Exon117589   285   IV: 3729051-3729335 Caenorhabditis elegans
Exon117591   418   IV: 3730170-3730587 Caenorhabditis elegans
Exon117593   589   IV: 3731182-3731770 Caenorhabditis elegans
Exon117595   274   IV: 3732463-3732736 Caenorhabditis elegans
Exon117597   546   IV: 3733635-3734180 Caenorhabditis elegans
Exon117600   345   IV: 3735152-3735496 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y37E11AM.1a.1 3726164 3735496 1

1 Sequence

Length
3321

1 Sequence Ontology Term

Identifier Name Description
transcript