WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y37E11AR.1.1 Sequence Name  Y37E11AR.1.1
Length (nt)  1604   Chromosome Location  IV: 3756221-3759940
Chromosome . Primary Identifier  IV Chromosome Location . Start  3756221
Chromosome Location . End  3759940 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y37E11AR.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021368 best-20 Y37E11AR.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y37E11AR.1 Y37E11AR.1 1461   IV: 3756242-3756317

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y37E11AR.1.1 3756221 3759940 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon117650   97   IV: 3756221-3756317 Caenorhabditis elegans
Exon117651   106   IV: 3756359-3756464 Caenorhabditis elegans
Exon117652   138   IV: 3756603-3756740 Caenorhabditis elegans
Exon117653   94   IV: 3757116-3757209 Caenorhabditis elegans
Exon117654   375   IV: 3757254-3757628 Caenorhabditis elegans
Exon117655   165   IV: 3757676-3757840 Caenorhabditis elegans
Exon117656   149   IV: 3758305-3758453 Caenorhabditis elegans
Exon117657   71   IV: 3758537-3758607 Caenorhabditis elegans
Exon117658   91   IV: 3758654-3758744 Caenorhabditis elegans
Exon117659   70   IV: 3758798-3758867 Caenorhabditis elegans
Exon117660   90   IV: 3758930-3759019 Caenorhabditis elegans
Exon117661   158   IV: 3759783-3759940 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y37E11AR.1.1 3756221 3759940 1

1 Sequence

Length
1604

1 Sequence Ontology Term

Identifier Name Description
transcript