WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F37C4.2.1 Sequence Name  F37C4.2.1
Length (nt)  2146   Chromosome Location  IV: 3885669-3888836
Chromosome . Primary Identifier  IV Chromosome Location . Start  3885669
Chromosome Location . End  3888836 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F37C4.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018142 oac-22 F37C4.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F37C4.2 F37C4.2 2061   IV: 3885669-3885799

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F37C4.2.1 3885669 3888836 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon117910   131   IV: 3885669-3885799 Caenorhabditis elegans
Exon117911   265   IV: 3885890-3886154 Caenorhabditis elegans
Exon117912   139   IV: 3886461-3886599 Caenorhabditis elegans
Exon117913   84   IV: 3886648-3886731 Caenorhabditis elegans
Exon117914   244   IV: 3886774-3887017 Caenorhabditis elegans
Exon117915   167   IV: 3887071-3887237 Caenorhabditis elegans
Exon117916   225   IV: 3887289-3887513 Caenorhabditis elegans
Exon117917   113   IV: 3887555-3887667 Caenorhabditis elegans
Exon117918   127   IV: 3887715-3887841 Caenorhabditis elegans
Exon117919   112   IV: 3887888-3887999 Caenorhabditis elegans
Exon117920   211   IV: 3888044-3888254 Caenorhabditis elegans
Exon117921   328   IV: 3888509-3888836 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F37C4.2.1 3885669 3888836 1

1 Sequence

Length
2146

1 Sequence Ontology Term

Identifier Name Description
transcript