WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F37C4.2.1 Sequence Name  F37C4.2.1
Length (nt)  2146   Chromosome Location  IV: 3885669-3888836
Chromosome . Primary Identifier  IV Chromosome Location . Start  3885669
Chromosome Location . End  3888836 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F37C4.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018142 oac-22 F37C4.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F37C4.2 F37C4.2 2061   IV: 3885669-3885799

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F37C4.2.1 3885669 3888836 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon117965   131   IV: 3885669-3885799 Caenorhabditis elegans
Exon117966   265   IV: 3885890-3886154 Caenorhabditis elegans
Exon117967   139   IV: 3886461-3886599 Caenorhabditis elegans
Exon117968   84   IV: 3886648-3886731 Caenorhabditis elegans
Exon117969   244   IV: 3886774-3887017 Caenorhabditis elegans
Exon117970   167   IV: 3887071-3887237 Caenorhabditis elegans
Exon117971   225   IV: 3887289-3887513 Caenorhabditis elegans
Exon117972   113   IV: 3887555-3887667 Caenorhabditis elegans
Exon117973   127   IV: 3887715-3887841 Caenorhabditis elegans
Exon117974   112   IV: 3887888-3887999 Caenorhabditis elegans
Exon117975   211   IV: 3888044-3888254 Caenorhabditis elegans
Exon117976   328   IV: 3888509-3888836 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F37C4.2.1 3885669 3888836 1

1 Sequence

Length
2146

1 Sequence Ontology Term

Identifier Name Description
transcript