WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F36A4.7.1 Sequence Name  F36A4.7.1
Length (nt)  6020   Chromosome Location  IV: 4248070-4258169
Chromosome . Primary Identifier  IV Chromosome Location . Start  4248070
Chromosome Location . End  4258169 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F36A4.7.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000123 ama-1 F36A4.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F36A4.7 F36A4.7 5571   IV: 4248188-4248271

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F36A4.7.1 4248070 4258169 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon118745   62   IV: 4248070-4248131 Caenorhabditis elegans
Exon118746   84   IV: 4248188-4248271 Caenorhabditis elegans
Exon118747   110   IV: 4248322-4248431 Caenorhabditis elegans
Exon118748   329   IV: 4248529-4248857 Caenorhabditis elegans
Exon118749   721   IV: 4249342-4250062 Caenorhabditis elegans
Exon118750   306   IV: 4250379-4250684 Caenorhabditis elegans
Exon118751   781   IV: 4250991-4251771 Caenorhabditis elegans
Exon118752   414   IV: 4252070-4252483 Caenorhabditis elegans
Exon118753   741   IV: 4252874-4253614 Caenorhabditis elegans
Exon118754   1589   IV: 4254069-4255657 Caenorhabditis elegans
Exon118755   208   IV: 4256060-4256267 Caenorhabditis elegans
Exon118756   186   IV: 4256688-4256873 Caenorhabditis elegans
Exon118757   489   IV: 4257681-4258169 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F36A4.7.1 4248070 4258169 1

1 Sequence

Length
6020

1 Sequence Ontology Term

Identifier Name Description
transcript