WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W03B1.2.1 Sequence Name  W03B1.2.1
Length (nt)  2697   Chromosome Location  IV: 4326654-4332083
Chromosome . Primary Identifier  IV Chromosome Location . Start  4326654
Chromosome Location . End  4332083 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W03B1.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020972 trpl-2 W03B1.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W03B1.2 W03B1.2 2445   IV: 4326716-4326925

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:W03B1.2.1 4326654 4332083 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon118949   272   IV: 4326654-4326925 Caenorhabditis elegans
Exon118950   94   IV: 4327501-4327594 Caenorhabditis elegans
Exon118951   106   IV: 4327726-4327831 Caenorhabditis elegans
Exon118952   150   IV: 4327902-4328051 Caenorhabditis elegans
Exon118953   208   IV: 4328520-4328727 Caenorhabditis elegans
Exon118954   84   IV: 4328777-4328860 Caenorhabditis elegans
Exon118955   192   IV: 4328957-4329148 Caenorhabditis elegans
Exon118956   396   IV: 4329568-4329963 Caenorhabditis elegans
Exon118957   79   IV: 4330048-4330126 Caenorhabditis elegans
Exon118958   265   IV: 4330188-4330452 Caenorhabditis elegans
Exon118959   72   IV: 4331191-4331262 Caenorhabditis elegans
Exon118960   779   IV: 4331305-4332083 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:W03B1.2.1 4326654 4332083 1

1 Sequence

Length
2697

1 Sequence Ontology Term

Identifier Name Description
transcript