WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W03B1.8.1 Sequence Name  W03B1.8.1
Length (nt)  2210   Chromosome Location  IV: 4342262-4346612
Chromosome . Primary Identifier  IV Chromosome Location . Start  4342262
Chromosome Location . End  4346612 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W03B1.8.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020977 oac-52 W03B1.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W03B1.8 W03B1.8 2061   IV: 4342357-4342599

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:W03B1.8.1 4342262 4346612 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon118985   338   IV: 4342262-4342599 Caenorhabditis elegans
Exon118986   211   IV: 4342650-4342860 Caenorhabditis elegans
Exon118987   115   IV: 4342981-4343095 Caenorhabditis elegans
Exon118989   127   IV: 4343263-4343389 Caenorhabditis elegans
Exon118990   110   IV: 4343446-4343555 Caenorhabditis elegans
Exon118991   225   IV: 4343622-4343846 Caenorhabditis elegans
Exon118992   167   IV: 4343898-4344064 Caenorhabditis elegans
Exon118993   238   IV: 4344797-4345034 Caenorhabditis elegans
Exon118994   87   IV: 4345078-4345164 Caenorhabditis elegans
Exon118995   139   IV: 4345215-4345353 Caenorhabditis elegans
Exon118996   265   IV: 4346099-4346363 Caenorhabditis elegans
Exon118997   188   IV: 4346425-4346612 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:W03B1.8.1 4342262 4346612 -1

1 Sequence

Length
2210

1 Sequence Ontology Term

Identifier Name Description
transcript