WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R08C7.10d.1 Sequence Name  R08C7.10d.1
Length (nt)  1848   Chromosome Location  IV: 4443408-4445740
Chromosome . Primary Identifier  IV Chromosome Location . Start  4443408
Chromosome Location . End  4445740 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R08C7.10d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019953 wapl-1 R08C7.10 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R08C7.10d R08C7.10d 1848   IV: 4443408-4443542

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R08C7.10d.1 4443408 4445740 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon119189   135   IV: 4443408-4443542 Caenorhabditis elegans
Exon119195   75   IV: 4443592-4443666 Caenorhabditis elegans
Exon119199   232   IV: 4443721-4443952 Caenorhabditis elegans
Exon119203   77   IV: 4444001-4444077 Caenorhabditis elegans
Exon119207   89   IV: 4444127-4444215 Caenorhabditis elegans
Exon119211   470   IV: 4444267-4444736 Caenorhabditis elegans
Exon119215   194   IV: 4444782-4444975 Caenorhabditis elegans
Exon119219   155   IV: 4445022-4445176 Caenorhabditis elegans
Exon119223   199   IV: 4445226-4445424 Caenorhabditis elegans
Exon119227   181   IV: 4445464-4445644 Caenorhabditis elegans
Exon119231   41   IV: 4445700-4445740 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R08C7.10d.1 4443408 4445740 -1

1 Sequence

Length
1848

1 Sequence Ontology Term

Identifier Name Description
transcript