WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZK180.1.1 Sequence Name  ZK180.1.1
Length (nt)  2751   Chromosome Location  IV: 4488929-4506748
Chromosome . Primary Identifier  IV Chromosome Location . Start  4488929
Chromosome Location . End  4506748 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZK180.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00022675 gbb-2 ZK180.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK180.1 ZK180.1 2529   IV: 4489012-4489070

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:ZK180.1.1 4488929 4506748 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon119406   142   IV: 4488929-4489070 Caenorhabditis elegans
Exon119407   35   IV: 4490324-4490358 Caenorhabditis elegans
Exon119410   85   IV: 4490530-4490614 Caenorhabditis elegans
Exon119415   70   IV: 4495533-4495602 Caenorhabditis elegans
Exon119416   70   IV: 4495650-4495719 Caenorhabditis elegans
Exon119417   113   IV: 4496269-4496381 Caenorhabditis elegans
Exon119418   225   IV: 4497235-4497459 Caenorhabditis elegans
Exon119419   102   IV: 4497869-4497970 Caenorhabditis elegans
Exon119420   364   IV: 4498326-4498689 Caenorhabditis elegans
Exon119421   287   IV: 4499045-4499331 Caenorhabditis elegans
Exon119422   183   IV: 4499639-4499821 Caenorhabditis elegans
Exon119423   124   IV: 4502114-4502237 Caenorhabditis elegans
Exon119424   131   IV: 4502289-4502419 Caenorhabditis elegans
Exon119426   117   IV: 4502735-4502851 Caenorhabditis elegans
Exon119427   132   IV: 4503822-4503953 Caenorhabditis elegans
Exon119430   99   IV: 4504146-4504244 Caenorhabditis elegans
Exon119432   90   IV: 4504732-4504821 Caenorhabditis elegans
Exon119433   162   IV: 4505369-4505530 Caenorhabditis elegans
Exon119434   220   IV: 4506529-4506748 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:ZK180.1.1 4488929 4506748 -1

1 Sequence

Length
2751

1 Sequence Ontology Term

Identifier Name Description
transcript