WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F28E10.1i.1 Sequence Name  F28E10.1i.1
Length (nt)  3792   Chromosome Location  IV: 4575727-4590070
Chromosome . Primary Identifier  IV Chromosome Location . Start  4575727
Chromosome Location . End  4590070 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F28E10.1i.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017900 F28E10.1 F28E10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F28E10.1i F28E10.1i 3792   IV: 4575727-4575764

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F28E10.1i.1 4575727 4590070 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon119531   38   IV: 4575727-4575764 Caenorhabditis elegans
Exon119535   124   IV: 4577918-4578041 Caenorhabditis elegans
Exon119542   99   IV: 4578380-4578478 Caenorhabditis elegans
Exon119547   114   IV: 4578786-4578899 Caenorhabditis elegans
Exon119554   197   IV: 4580091-4580287 Caenorhabditis elegans
Exon119562   94   IV: 4581365-4581458 Caenorhabditis elegans
Exon119570   176   IV: 4581903-4582078 Caenorhabditis elegans
Exon119577   1499   IV: 4582134-4583632 Caenorhabditis elegans
Exon119584   673   IV: 4584450-4585122 Caenorhabditis elegans
Exon119591   58   IV: 4585317-4585374 Caenorhabditis elegans
Exon119598   71   IV: 4585679-4585749 Caenorhabditis elegans
Exon119605   176   IV: 4585808-4585983 Caenorhabditis elegans
Exon119612   73   IV: 4586300-4586372 Caenorhabditis elegans
Exon119619   123   IV: 4587382-4587504 Caenorhabditis elegans
Exon119630   42   IV: 4588803-4588844 Caenorhabditis elegans
Exon119639   106   IV: 4588893-4588998 Caenorhabditis elegans
Exon119646   129   IV: 4589942-4590070 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F28E10.1i.1 4575727 4590070 1

1 Sequence

Length
3792

1 Sequence Ontology Term

Identifier Name Description
transcript