WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:H06H21.10f.1 Sequence Name  H06H21.10f.1
Length (nt)  4273   Chromosome Location  IV: 4827853-4846893
Chromosome . Primary Identifier  IV Chromosome Location . Start  4827853
Chromosome Location . End  4846893 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
H06H21.10f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019166 tat-2 H06H21.10 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:H06H21.10f H06H21.10f 4050   IV: 4828076-4828111

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:H06H21.10f.1 4827853 4846893 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

24 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon120267   259   IV: 4827853-4828111 Caenorhabditis elegans
Exon120270   118   IV: 4828527-4828644 Caenorhabditis elegans
Exon120276   98   IV: 4828751-4828848 Caenorhabditis elegans
Exon120284   217   IV: 4829370-4829586 Caenorhabditis elegans
Exon120291   329   IV: 4829806-4830134 Caenorhabditis elegans
Exon120299   133   IV: 4830942-4831074 Caenorhabditis elegans
Exon120306   394   IV: 4831469-4831862 Caenorhabditis elegans
Exon120313   151   IV: 4832638-4832788 Caenorhabditis elegans
Exon120319   149   IV: 4832916-4833064 Caenorhabditis elegans
Exon120325   88   IV: 4833110-4833197 Caenorhabditis elegans
Exon120334   144   IV: 4834287-4834430 Caenorhabditis elegans
Exon120343   198   IV: 4834637-4834834 Caenorhabditis elegans
Exon120349   126   IV: 4834891-4835016 Caenorhabditis elegans
Exon120358   423   IV: 4835823-4836245 Caenorhabditis elegans
Exon120365   69   IV: 4837247-4837315 Caenorhabditis elegans
Exon120372   281   IV: 4837452-4837732 Caenorhabditis elegans
Exon120380   378   IV: 4838886-4839263 Caenorhabditis elegans
Exon120387   154   IV: 4839455-4839608 Caenorhabditis elegans
Exon120396   135   IV: 4840116-4840250 Caenorhabditis elegans
Exon120404   99   IV: 4840395-4840493 Caenorhabditis elegans
Exon120410   114   IV: 4840543-4840656 Caenorhabditis elegans
Exon120420   155   IV: 4841017-4841171 Caenorhabditis elegans
Exon120425   57   IV: 4841707-4841763 Caenorhabditis elegans
Exon120441   4   IV: 4846890-4846893 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:H06H21.10f.1 4827853 4846893 -1

1 Sequence

Length
4273

1 Sequence Ontology Term

Identifier Name Description
transcript