WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:H06H21.10c.1 Sequence Name  H06H21.10c.1
Length (nt)  3795   Chromosome Location  IV: 4828747-4841127
Chromosome . Primary Identifier  IV Chromosome Location . Start  4828747
Chromosome Location . End  4841127 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
H06H21.10c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019166 tat-2 H06H21.10 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:H06H21.10c H06H21.10c 3795   IV: 4828747-4828848

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:H06H21.10c.1 4828747 4841127 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon120271   102   IV: 4828747-4828848 Caenorhabditis elegans
Exon120281   217   IV: 4829370-4829586 Caenorhabditis elegans
Exon120288   329   IV: 4829806-4830134 Caenorhabditis elegans
Exon120296   133   IV: 4830942-4831074 Caenorhabditis elegans
Exon120303   394   IV: 4831469-4831862 Caenorhabditis elegans
Exon120310   151   IV: 4832638-4832788 Caenorhabditis elegans
Exon120316   149   IV: 4832916-4833064 Caenorhabditis elegans
Exon120322   88   IV: 4833110-4833197 Caenorhabditis elegans
Exon120331   144   IV: 4834287-4834430 Caenorhabditis elegans
Exon120340   198   IV: 4834637-4834834 Caenorhabditis elegans
Exon120346   126   IV: 4834891-4835016 Caenorhabditis elegans
Exon120355   423   IV: 4835823-4836245 Caenorhabditis elegans
Exon120362   69   IV: 4837247-4837315 Caenorhabditis elegans
Exon120369   281   IV: 4837452-4837732 Caenorhabditis elegans
Exon120377   378   IV: 4838886-4839263 Caenorhabditis elegans
Exon120384   154   IV: 4839455-4839608 Caenorhabditis elegans
Exon120393   135   IV: 4840116-4840250 Caenorhabditis elegans
Exon120401   99   IV: 4840395-4840493 Caenorhabditis elegans
Exon120407   114   IV: 4840543-4840656 Caenorhabditis elegans
Exon120417   111   IV: 4841017-4841127 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:H06H21.10c.1 4828747 4841127 -1

1 Sequence

Length
3795

1 Sequence Ontology Term

Identifier Name Description
transcript