WormMine: Gene WBGene00195001

• WormBase Gene ID: WBGene00195001
• Gene Name: Y17G9A.85
• Sequence Name: Y17G9A.85
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by mett-10 based on RNA-seq studies.
• Biotype: SO:0001268
• Genetic Position: :±
• Length (nt): 101

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00195001

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:Y17G9A.85	Y17G9A.85	101	IV: 4864635-4864735

Other

0 CDSs

5 RNAi Result

• WBRNAi00051485
• WBRNAi00051486
• WBRNAi00018433
• WBRNAi00006782
• WBRNAi00006930

5 Allele

• gk964500
• gk963722
• gk963150
• gk763256
• WBVar02121203

1 Chromosome

• WormBase ID: IV
• Organism: Caenorhabditis elegans
• Length (nt): 17493829

1 Chromosome Location

• Feature . Primary Identifier: WBGene00195001
• Start: 4864635
• End: 4864735
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIV_4864280..4864634
• Length (nt): 355
• Chromosome Location: IV: 4864280-4864634
• Organism: Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly decreased expression in VC1743[mett-10(ok2204)] comparing to in N2 when animals grow on standard (OP50) plates.	DESeq2, p-value < 0.05, fold change > 2.	WBPaper00061357:mett-10(ok2204)_downregulated_OP50
	Transcripts that showed significantly decreased expression in VC1743[mett-10(ok2204)] comparing to in N2 when animals grow on peptone-rich (NA22) plates.	DESeq2, p-value < 0.05, fold change > 2.	WBPaper00061357:mett-10(ok2204)_downregulated_NA22

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00195001
• Start: 4864635
• End: 4864735
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 101

1 Sequence Ontology Term