WormMine: Gene WBGene00235376

• WormBase Gene ID: WBGene00235376
• Gene Name: Y9C9A.112
• Sequence Name: Y9C9A.112
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by etr-1 based on RNA-seq studies.
• Biotype: SO:0000336
• Genetic Position: :±
• Length (nt): 9122

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00235376

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

51 Allele

• otn9990
• otn9991
• gk964500
• gk963722
• otn8725
• otn8726
• otn8727
• gk963867
• gk963150
• otn12270
• otn12269
• otn11275
• otn11277
• otn11276
• gk963978
• gk964027
• gk963614
• WBVar02123595
• otn604
• otn13233
• gk201084
• WBVar01727590
• tm11969
• WBVar01452329
• WBVar01452330
• otn6613
• gk735874
• otn5217
• gk753106
• otn5218

1 Chromosome

• WormBase ID: IV
• Organism: Caenorhabditis elegans
• Length (nt): 17493829

1 Chromosome Location

• Feature . Primary Identifier: WBGene00235376
• Start: 4920355
• End: 4929476
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIV_4929477..4929766
• Length (nt): 290
• Chromosome Location: IV: 4929477-4929766
• Organism: Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in L1 neural cells comparing to in adult neural cells.	DESeq2 (v1.18.1) fold change > 2, P-adj<0.05, using BenjaminiHochberg correction.	WBPaper00060811:L1_vs_adult_upregulated_neural
	Transcripts that showed significantly increased expression in daf-2(e1370) neurons comparing to in N2 neurons at day 8adult stage.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00066978:daf-2(e1370)_upregulated_neuron
	Transcripts that showed significantly increased expression in daf-16(mu86);daf-2(e1370) neurons comparing to in daf-2(e1370) neurons at day 8adult stage.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00066978:daf-16(mu86)_upregulated_neuron
	Transcripts that showed significantly decreased expression in whole animal day 1 N2 adults comparing to in whole animal day 8 N2 adults.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00066978:Day1Adult_vs_Day8Adult_downregulated_neuron
	Transcripts of noncoding genes that showed significantly decreased expression in muscle.	DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed.	WBPaper00062325:muscle_depleted_noncoding-RNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00235376
• Start: 4920355
• End: 4929476
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 9122

1 Sequence Ontology Term