WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y9C9A.16a.1 Sequence Name  Y9C9A.16a.1
Length (nt)  1184   Chromosome Location  IV: 4973524-4975504
Chromosome . Primary Identifier  IV Chromosome Location . Start  4973524
Chromosome Location . End  4975504 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y9C9A.16a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021183 Y9C9A.16 Y9C9A.16 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y9C9A.16a Y9C9A.16a 1086   IV: 4973622-4973858

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y9C9A.16a.1 4973524 4975504 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

7 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon120879   335   IV: 4973524-4973858 Caenorhabditis elegans
Exon120881   144   IV: 4974261-4974404 Caenorhabditis elegans
Exon120883   108   IV: 4974447-4974554 Caenorhabditis elegans
Exon120887   171   IV: 4974634-4974804 Caenorhabditis elegans
Exon120890   147   IV: 4974915-4975061 Caenorhabditis elegans
Exon120892   99   IV: 4975104-4975202 Caenorhabditis elegans
Exon120894   180   IV: 4975325-4975504 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y9C9A.16a.1 4973524 4975504 -1

1 Sequence

Length
1184

1 Sequence Ontology Term

Identifier Name Description
transcript