WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y4C6A.2d.1 Sequence Name  Y4C6A.2d.1
Length (nt)  3250   Chromosome Location  IV: 5439005-5450797
Chromosome . Primary Identifier  IV Chromosome Location . Start  5439005
Chromosome Location . End  5450797 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y4C6A.2d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021152 mgl-3 Y4C6A.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y4C6A.2d Y4C6A.2d 3027   IV: 5439075-5439391

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y4C6A.2d.1 5439005 5450797 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon122492   387   IV: 5439005-5439391 Caenorhabditis elegans
Exon122503   187   IV: 5440994-5441180 Caenorhabditis elegans
Exon122508   117   IV: 5441730-5441846 Caenorhabditis elegans
Exon122513   161   IV: 5441895-5442055 Caenorhabditis elegans
Exon122520   141   IV: 5442374-5442514 Caenorhabditis elegans
Exon122533   250   IV: 5443713-5443962 Caenorhabditis elegans
Exon122538   169   IV: 5444074-5444242 Caenorhabditis elegans
Exon122547   295   IV: 5444626-5444920 Caenorhabditis elegans
Exon122558   78   IV: 5445482-5445559 Caenorhabditis elegans
Exon122564   106   IV: 5445607-5445712 Caenorhabditis elegans
Exon122571   117   IV: 5446125-5446241 Caenorhabditis elegans
Exon122580   123   IV: 5446287-5446409 Caenorhabditis elegans
Exon122592   321   IV: 5446713-5447033 Caenorhabditis elegans
Exon122603   75   IV: 5447154-5447228 Caenorhabditis elegans
Exon122615   92   IV: 5447983-5448074 Caenorhabditis elegans
Exon122623   74   IV: 5448200-5448273 Caenorhabditis elegans
Exon122629   123   IV: 5448361-5448483 Caenorhabditis elegans
Exon122655   434   IV: 5450364-5450797 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y4C6A.2d.1 5439005 5450797 1

1 Sequence

Length
3250

1 Sequence Ontology Term

Identifier Name Description
transcript