WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y4C6A.2f.1 Sequence Name  Y4C6A.2f.1
Length (nt)  1791   Chromosome Location  IV: 5444131-5450644
Chromosome . Primary Identifier  IV Chromosome Location . Start  5444131
Chromosome Location . End  5450644 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y4C6A.2f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021152 mgl-3 Y4C6A.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y4C6A.2f Y4C6A.2f 1791   IV: 5444131-5444242

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y4C6A.2f.1 5444131 5450644 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon122488   112   IV: 5444131-5444242 Caenorhabditis elegans
Exon122494   295   IV: 5444626-5444920 Caenorhabditis elegans
Exon122505   78   IV: 5445482-5445559 Caenorhabditis elegans
Exon122511   106   IV: 5445607-5445712 Caenorhabditis elegans
Exon122518   117   IV: 5446125-5446241 Caenorhabditis elegans
Exon122527   123   IV: 5446287-5446409 Caenorhabditis elegans
Exon122539   321   IV: 5446713-5447033 Caenorhabditis elegans
Exon122550   75   IV: 5447154-5447228 Caenorhabditis elegans
Exon122562   92   IV: 5447983-5448074 Caenorhabditis elegans
Exon122570   74   IV: 5448200-5448273 Caenorhabditis elegans
Exon122578   117   IV: 5448367-5448483 Caenorhabditis elegans
Exon122594   281   IV: 5450364-5450644 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y4C6A.2f.1 5444131 5450644 1

1 Sequence

Length
1791

1 Sequence Ontology Term

Identifier Name Description
transcript