WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F35D6.1a.1 Sequence Name  F35D6.1a.1
Length (nt)  2292   Chromosome Location  IV: 5533142-5537915
Chromosome . Primary Identifier  IV Chromosome Location . Start  5533142
Chromosome Location . End  5537915 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F35D6.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001411 fem-1 F35D6.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F35D6.1a F35D6.1a 1971   IV: 5533404-5533525

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F35D6.1a.1 5533142 5537915 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon122872   384   IV: 5533142-5533525 Caenorhabditis elegans
Exon122873   716   IV: 5534125-5534840 Caenorhabditis elegans
Exon122875   146   IV: 5534907-5535052 Caenorhabditis elegans
Exon122877   117   IV: 5536526-5536642 Caenorhabditis elegans
Exon122879   366   IV: 5536689-5537054 Caenorhabditis elegans
Exon122881   89   IV: 5537110-5537198 Caenorhabditis elegans
Exon122883   106   IV: 5537246-5537351 Caenorhabditis elegans
Exon122885   47   IV: 5537402-5537448 Caenorhabditis elegans
Exon122887   61   IV: 5537498-5537558 Caenorhabditis elegans
Exon122889   126   IV: 5537603-5537728 Caenorhabditis elegans
Exon122891   134   IV: 5537782-5537915 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F35D6.1a.1 5533142 5537915 -1

1 Sequence

Length
2292

1 Sequence Ontology Term

Identifier Name Description
transcript