WormMine: Gene WBGene00170460

• WormBase Gene ID: WBGene00170460
• Gene Name: 21ur-10114
• Sequence Name: C39H7.49
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by ogt-1 based on RNA-seq studies.
• Biotype: SO:0001638
• Genetic Position: IV :1.97166±
• Length (nt): 21

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00170460

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:C39H7.49	C39H7.49	21	IV: 5627464-5627484

Other

0 CDSs

0 RNAi Result

6 Allele

• gk964500
• gk963722
• gk963417
• gk963150
• gk963375
• gk963416

1 Chromosome

• WormBase ID: IV
• Organism: Caenorhabditis elegans
• Length (nt): 17493829

1 Chromosome Location

• Feature . Primary Identifier: WBGene00170460
• Start: 5627464
• End: 5627484
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIV_5627485..5628529
• Length (nt): 1045
• Chromosome Location: IV: 5627485-5628529
• Organism: Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
	piRNAs that showed significantly lower expression (log2fold > 2, padj < 0.01) in hermaphrodite gonad (somatic gonad plus germine) than in male gonad (somatic gonad plus germine).	DESeq2 v1.13.8, fold change > 2, FDR < 0.01.	WBPaper00056161:male_enriched_piRNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00170460
• Start: 5627464
• End: 5627484
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 21

1 Sequence Ontology Term