WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C55C3.3.1 Sequence Name  C55C3.3.1
Length (nt)  1583   Chromosome Location  IV: 5685287-5688273
Chromosome . Primary Identifier  IV Chromosome Location . Start  5685287
Chromosome Location . End  5688273 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C55C3.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016953 C55C3.3 C55C3.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C55C3.3 C55C3.3 1515   IV: 5685337-5685353

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C55C3.3.1 5685287 5688273 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon123452   67   IV: 5685287-5685353 Caenorhabditis elegans
Exon123453   122   IV: 5685457-5685578 Caenorhabditis elegans
Exon123454   107   IV: 5685625-5685731 Caenorhabditis elegans
Exon123455   69   IV: 5685779-5685847 Caenorhabditis elegans
Exon123456   114   IV: 5686092-5686205 Caenorhabditis elegans
Exon123457   387   IV: 5686253-5686639 Caenorhabditis elegans
Exon123458   190   IV: 5686686-5686875 Caenorhabditis elegans
Exon123459   83   IV: 5686930-5687012 Caenorhabditis elegans
Exon123460   268   IV: 5687453-5687720 Caenorhabditis elegans
Exon123461   53   IV: 5688054-5688106 Caenorhabditis elegans
Exon123462   123   IV: 5688151-5688273 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C55C3.3.1 5685287 5688273 1

1 Sequence

Length
1583

1 Sequence Ontology Term

Identifier Name Description
transcript