WormMine: Gene WBGene00172174

• WormBase Gene ID: WBGene00172174
• Gene Name: 21ur-8491
• Sequence Name: C31H1.77
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in Q cell and neurons based on RNA-seq studies. Is affected by set-2 and ogt-1 based on RNA-seq studies.
• Biotype: SO:0001638
• Genetic Position: IV :2.40882±
• Length (nt): 21

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00172174

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:C31H1.77	C31H1.77	21	IV: 5807638-5807658

Other

0 CDSs

0 RNAi Result

5 Allele

• gk964500
• gk963722
• gk963417
• gk963375
• gk963416

1 Chromosome

• WormBase ID: IV
• Organism: Caenorhabditis elegans
• Length (nt): 17493829

1 Chromosome Location

• Feature . Primary Identifier: WBGene00172174
• Start: 5807638
• End: 5807658
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIV_5807659..5807933
• Length (nt): 275
• Chromosome Location: IV: 5807659-5807933
• Organism: Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology.	DESEQ2, fold change > 2 and FDR < 0.01.	WBPaper00062103:neuron_enriched
	Transcripts that showed significantly decreased expression in set-2(tm1630) animals at embryo stage, comparing to in N2 animals.	DESeq2 (v2.1.8.3) was used to determine DE genes and to generate principal component and scatter plots. DE genes with FDR < 0.05 were analysed using g:Profiler with Bonferroni correction.	WBPaper00060014:set-2(tm1630)_downregulated
	Transcripts enriched in Q cell.	DESeq2 (version 2.11.40.7) FDR < 0.05, fold change > 2.	WBPaper00066652:Q-cell_enriched
	Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_downregulated_neuron

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00172174
• Start: 5807638
• End: 5807658
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 21

1 Sequence Ontology Term